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Lj2g3v3223980.1

Overview

Field Value
Gene ID Lj2g3v3223980
Transcript ID Lj2g3v3223980.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561434|ref|XP_003548986.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 191 191 – –
PANTHER
PTHR27004
29 235 207 2.90E-121 –
PANTHER
PTHR27004:SF1
29 235 207 2.90E-121 –
Gene3D
G3DSA:3.80.10.10
32 161 130 3.20E-29
IPR032675
SUPERFAMILY
SSF52058
50 147 98 6.91E-24
IPR032675
Pfam
PF13855
92 131 40 5.80E-07
IPR001611
PRINTS
PR00019
97 110 14 2.60E-05 –
PRINTS
PR00019
118 131 14 2.60E-05 –
TMHMM
TMhelix
191 213 23 – –
Phobius
TRANSMEMBRANE
192 212 21 – –
Phobius
CYTOPLASMIC_DOMAIN
213 249 37 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v3223980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3223980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.