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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3337550 |
| Transcript ID | Lj2g3v3337550.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calcium-transporting ATPase [Medicago truncatula] gi|357495317|ref|XP_003617947.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 17 | 17 | – | – | |
| Phobius | 3 | 13 | 11 | – | – | |
| Phobius | 14 | 17 | 4 | – | – | |
| Phobius | 18 | 26 | 9 | – | – | |
| Phobius | 27 | 48 | 22 | – | – | |
| SUPERFAMILY | 40 | 118 | 79 | 2.88E-48 | – | |
| Phobius | 49 | 54 | 6 | – | – | |
| Phobius | 55 | 72 | 18 | – | – | |
| TMHMM | 55 | 72 | 18 | – | – | |
| PANTHER | 56 | 921 | 866 | 6.60E-147 | – | |
| PANTHER | 56 | 921 | 866 | 6.60E-147 | – | |
| Phobius | 73 | 83 | 11 | – | – | |
| TMHMM | 82 | 104 | 23 | – | – | |
| Phobius | 84 | 104 | 21 | – | – | |
| Pfam | 91 | 212 | 122 | 6.60E-09 | ||
| Phobius | 105 | 320 | 216 | – | – | |
| SUPERFAMILY | 124 | 203 | 80 | 4.45E-09 | – | |
| Gene3D | 170 | 215 | 46 | 1.60E-66 | ||
| Gene3D | 235 | 273 | 39 | 1.80E-18 | ||
| Gene3D | 319 | 546 | 228 | 1.80E-18 | ||
| TMHMM | 321 | 343 | 23 | – | – | |
| Phobius | 321 | 343 | 23 | – | – | |
| SUPERFAMILY | 321 | 373 | 53 | 2.88E-48 | – | |
| Phobius | 344 | 362 | 19 | – | – | |
| Phobius | 363 | 387 | 25 | – | – | |
| TMHMM | 366 | 388 | 23 | – | – | |
| SUPERFAMILY | 377 | 397 | 21 | 5.63E-17 | ||
| Phobius | 388 | 722 | 335 | – | – | |
| SUPERFAMILY | 434 | 565 | 132 | 9.59E-11 | ||
| SUPERFAMILY | 522 | 765 | 244 | 5.63E-17 | ||
| Gene3D | 644 | 921 | 278 | 1.60E-66 | ||
| SUPERFAMILY | 713 | 921 | 209 | 2.88E-48 | – | |
| Phobius | 723 | 743 | 21 | – | – | |
| TMHMM | 723 | 745 | 23 | – | – | |
| Phobius | 744 | 754 | 11 | – | – | |
| Pfam | 748 | 916 | 169 | 2.30E-25 | ||
| TMHMM | 750 | 772 | 23 | – | – | |
| Phobius | 755 | 775 | 21 | – | – | |
| Phobius | 776 | 795 | 20 | – | – | |
| Phobius | 796 | 819 | 24 | – | – | |
| TMHMM | 797 | 819 | 23 | – | – | |
| Phobius | 820 | 830 | 11 | – | – | |
| TMHMM | 829 | 851 | 23 | – | – | |
| Phobius | 831 | 851 | 21 | – | – | |
| Phobius | 852 | 862 | 11 | – | – | |
| Phobius | 863 | 885 | 23 | – | – | |
| TMHMM | 864 | 883 | 20 | – | – | |
| Phobius | 886 | 896 | 11 | – | – | |
| Phobius | 897 | 917 | 21 | – | – | |
| TMHMM | 898 | 917 | 20 | – | – | |
| Phobius | 918 | 956 | 39 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
Expression pattern of Lj2g3v3337550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3337550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.