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Lj2g3v3341890.2

Overview

Field Value
Gene ID Lj2g3v3341890
Transcript ID Lj2g3v3341890.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description RING/U-box superfamily protein isoform 2 [Theobroma cacao] gi|508701147|gb|EOX93043.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 337 337 – –
MobiDBLite
mobidb-lite
1 49 49 – –
MobiDBLite
mobidb-lite
65 131 67 – –
PANTHER
PTHR23012
107 391 285 4.40E-144
IPR033275
PANTHER
PTHR23012:SF25
107 391 285 4.40E-144 –
ProSiteProfiles
PS51292
245 307 63 19.725
IPR011016
Gene3D
G3DSA:3.30.40.10
247 304 58 9.40E-18
IPR013083
SUPERFAMILY
SSF57850
248 304 57 6.48E-14 –
SMART
SM00744
252 301 50 6.00E-20
IPR011016
Pfam
PF12906
253 300 48 3.50E-12
IPR011016
Phobius
TRANSMEMBRANE
338 357 20 – –
Phobius
CYTOPLASMIC_DOMAIN
358 368 11 – –
Phobius
TRANSMEMBRANE
369 388 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
389 392 4 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v3341890.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3341890.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.