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Lj3g3v0030650.1

Overview

Field Value
Gene ID Lj3g3v0030650
Transcript ID Lj3g3v0030650.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic-like [Cicer arietinum] gi|502080646|ref|XP_004486631.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11835:SF53
6 407 402 1.10E-275 –
PANTHER
PTHR11835
6 407 402 1.10E-275
IPR001804
SUPERFAMILY
SSF53659
39 397 359 7.20E-115 –
Gene3D
G3DSA:3.40.718.10
40 398 359 7.90E-127
IPR024084
Hamap
MF_01033
45 399 355 48.914
IPR004429
SMART
SM01329
46 395 350 4.00E-190
IPR024084
TIGRFAM
TIGR00169
47 395 349 3.20E-151
IPR004429
Pfam
PF00180
47 395 349 6.40E-131
IPR024084
ProSitePatterns
PS00470
286 305 20 –
IPR019818

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003862
Molecular function 3-isopropylmalate dehydrogenase activity Catalysis of the reaction: 3-carboxy-2-hydroxy-4-methylpentanoate + NAD+ = 3-carboxy-4-methyl-2-oxopentanoate + NADH + H+.
Subterm of
GO:0009098
Biological process Leucine biosynthetic process The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj3g3v0030650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0030650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.