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Lj3g3v0180800.2

Overview

Field Value
Gene ID Lj3g3v0180800
Transcript ID Lj3g3v0180800.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RABF2b-like [Glycine max] gi|356556138|ref|XP_003546384.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
3 200 198 3.80E-154 –
PANTHER
PTHR24073:SF501
3 200 198 3.80E-154 –
ProSiteProfiles
PS51419
5 200 196 31.835 –
Gene3D
G3DSA:3.40.50.300
7 188 182 1.70E-65
IPR027417
SMART
SM00173
8 174 167 1.40E-27 –
SUPERFAMILY
SSF52540
10 175 166 5.04E-54
IPR027417
TIGRFAM
TIGR00231
10 167 158 1.00E-28
IPR005225
CDD
cd01860
10 171 162 3.52E-108 –
SMART
SM00175
11 174 164 2.10E-76 –
PRINTS
PR00449
11 32 22 6.80E-34 –
Pfam
PF00071
12 171 160 2.60E-58
IPR001806
SMART
SM00174
13 174 162 2.40E-12 –
SMART
SM00176
16 199 184 9.20E-05 –
PRINTS
PR00449
34 50 17 6.80E-34 –
PRINTS
PR00449
52 74 23 6.80E-34 –
PRINTS
PR00449
114 127 14 6.80E-34 –
PRINTS
PR00449
149 171 23 6.80E-34 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj3g3v0180800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0180800.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.