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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0306960 |
| Transcript ID | Lj3g3v0306960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Cicer arietinum] gi|502100078|ref|XP_004491630.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 17 | 5 | – | – | |
| Phobius | 18 | 275 | 258 | – | – | |
| PANTHER | 48 | 275 | 228 | 5.00E-137 | – | |
| PANTHER | 48 | 275 | 228 | 5.00E-137 | ||
| Gene3D | 89 | 274 | 186 | 7.40E-75 | ||
| SUPERFAMILY | 91 | 275 | 185 | 2.09E-71 | ||
| Pfam | 97 | 274 | 178 | 3.50E-72 | ||
| PRINTS | 119 | 135 | 17 | 2.50E-57 | ||
| PRINTS | 136 | 157 | 22 | 2.50E-57 | ||
| PRINTS | 182 | 206 | 25 | 2.50E-57 | ||
| PRINTS | 221 | 243 | 23 | 2.50E-57 | ||
| PRINTS | 258 | 275 | 18 | 2.50E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Coproporphyrinogen oxidase activity | Catalysis of the reaction: coproporphyrinogen III + 2 H(+) + O(2) = 2 CO(2) + 2 H(2)O + protoporphyrinogen IX. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj3g3v0306960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0306960.1, powered by CORGI.
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