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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0312100 |
| Transcript ID | Lj3g3v0312100.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15220808|ref|NP_173207.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 33 | 33 | – | – | |
| PANTHER | 12 | 263 | 252 | 0 | – | |
| PANTHER | 12 | 263 | 252 | 0 | – | |
| ProSiteProfiles | 109 | 143 | 35 | 9.021 | ||
| TIGRFAM | 113 | 144 | 32 | 0.0023 | ||
| Pfam | 113 | 141 | 29 | 0.0017 | ||
| ProSiteProfiles | 144 | 178 | 35 | 5.031 | ||
| Gene3D | 171 | 199 | 29 | 7.80E-05 | ||
| ProSiteProfiles | 179 | 209 | 31 | 7.366 | ||
| TIGRFAM | 183 | 206 | 24 | 0.0018 | ||
| Pfam | 184 | 207 | 24 | 0.021 | ||
| ProSiteProfiles | 210 | 244 | 35 | 8.923 | ||
| Pfam | 213 | 238 | 26 | 0.0019 | ||
| ProSiteProfiles | 245 | 279 | 35 | 11.444 | ||
| Pfam | 247 | 277 | 31 | 1.30E-06 | ||
| TIGRFAM | 247 | 280 | 34 | 9.30E-07 | ||
| PANTHER | 299 | 665 | 367 | 0 | – | |
| PANTHER | 299 | 665 | 367 | 0 | – | |
| ProSiteProfiles | 315 | 345 | 31 | 5.47 | ||
| Gene3D | 323 | 373 | 51 | 7.80E-05 | ||
| ProSiteProfiles | 346 | 376 | 31 | 8.901 | ||
| Pfam | 349 | 375 | 27 | 4.10E-04 | ||
| Pfam | 385 | 433 | 49 | 5.30E-10 | ||
| ProSiteProfiles | 386 | 420 | 35 | 10.83 | ||
| TIGRFAM | 388 | 422 | 35 | 3.30E-06 | ||
| ProSiteProfiles | 421 | 451 | 31 | 5.119 | ||
| ProSiteProfiles | 456 | 486 | 31 | 6.401 | ||
| Pfam | 461 | 486 | 26 | 1.2 | ||
| Pfam | 487 | 534 | 48 | 5.70E-10 | ||
| ProSiteProfiles | 487 | 521 | 35 | 12.233 | ||
| TIGRFAM | 489 | 522 | 34 | 7.20E-08 | ||
| ProSiteProfiles | 522 | 557 | 36 | 7.848 | ||
| ProSiteProfiles | 558 | 588 | 31 | 6.665 | ||
| Gene3D | 618 | 643 | 26 | 7.80E-05 | ||
| ProSiteProfiles | 624 | 658 | 35 | 6.029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0312100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0312100.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.