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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0421670 |
| Transcript ID | Lj3g3v0421670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Vitis vinifera] gi|225456755|ref|XP_002268980.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 88 | 189 | 102 | 0 | – | |
| PANTHER | 88 | 189 | 102 | 0 | – | |
| ProSiteProfiles | 90 | 120 | 31 | 7.026 | ||
| Gene3D | 95 | 155 | 61 | 1.30E-04 | ||
| ProSiteProfiles | 121 | 155 | 35 | 10.665 | ||
| TIGRFAM | 123 | 157 | 35 | 2.70E-06 | ||
| Pfam | 123 | 153 | 31 | 5.10E-05 | ||
| ProSiteProfiles | 224 | 258 | 35 | 9.197 | ||
| Pfam | 227 | 270 | 44 | 2.90E-07 | ||
| ProSiteProfiles | 259 | 293 | 35 | 6.193 | ||
| PANTHER | 293 | 461 | 169 | 0 | – | |
| Gene3D | 293 | 342 | 50 | 1.30E-04 | ||
| PANTHER | 293 | 461 | 169 | 0 | – | |
| ProSiteProfiles | 294 | 328 | 35 | 8.177 | ||
| Pfam | 300 | 324 | 25 | 0.028 | ||
| ProSiteProfiles | 395 | 425 | 31 | 5.974 | ||
| ProSiteProfiles | 426 | 460 | 35 | 7.311 | ||
| ProSiteProfiles | 461 | 495 | 35 | 5.81 | ||
| ProSiteProfiles | 498 | 528 | 31 | 6.292 | ||
| PANTHER | 499 | 599 | 101 | 0 | – | |
| PANTHER | 499 | 599 | 101 | 0 | – | |
| Pfam | 503 | 528 | 26 | 0.46 | ||
| ProSiteProfiles | 529 | 563 | 35 | 8.638 | ||
| TIGRFAM | 531 | 557 | 27 | 2.70E-04 | ||
| Pfam | 531 | 557 | 27 | 5.30E-04 | ||
| Gene3D | 532 | 549 | 18 | 1.30E-04 | ||
| Gene3D | 617 | 657 | 41 | 1.30E-04 | ||
| ProSiteProfiles | 630 | 660 | 31 | 7.618 | ||
| Pfam | 632 | 656 | 25 | 0.01 | ||
| Gene3D | 698 | 758 | 61 | 1.30E-04 | ||
| ProSiteProfiles | 701 | 731 | 31 | 6.555 | ||
| PANTHER | 703 | 910 | 208 | 0 | – | |
| PANTHER | 703 | 910 | 208 | 0 | – | |
| Pfam | 732 | 778 | 47 | 2.70E-09 | ||
| ProSiteProfiles | 732 | 766 | 35 | 10.6 | ||
| TIGRFAM | 734 | 767 | 34 | 1.50E-04 | ||
| ProSiteProfiles | 767 | 797 | 31 | 8.594 | ||
| TIGRFAM | 769 | 797 | 29 | 0.0018 | ||
| ProSiteProfiles | 803 | 837 | 35 | 6.149 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0421670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0421670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.