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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0426270 |
| Transcript ID | Lj3g3v0426270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297847728|ref|XP_002891745.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 441 | 434 | 2.30E-135 | – | |
| ProSiteProfiles | 44 | 74 | 31 | 5.481 | ||
| Gene3D | 112 | 202 | 91 | 4.10E-05 | ||
| ProSiteProfiles | 115 | 145 | 31 | 5.261 | ||
| Pfam | 148 | 196 | 49 | 2.90E-15 | ||
| ProSiteProfiles | 149 | 183 | 35 | 13.395 | ||
| TIGRFAM | 151 | 184 | 34 | 1.90E-09 | ||
| ProSiteProfiles | 184 | 214 | 31 | 9.01 | ||
| TIGRFAM | 187 | 214 | 28 | 5.20E-04 | ||
| ProSiteProfiles | 220 | 254 | 35 | 9.46 | ||
| TIGRFAM | 223 | 256 | 34 | 5.80E-05 | ||
| Pfam | 223 | 252 | 30 | 8.00E-04 | ||
| ProSiteProfiles | 255 | 289 | 35 | 12.419 | ||
| Pfam | 256 | 303 | 48 | 9.00E-15 | ||
| Gene3D | 258 | 347 | 90 | 4.10E-05 | ||
| TIGRFAM | 258 | 290 | 33 | 1.40E-09 | ||
| ProSiteProfiles | 290 | 320 | 31 | 8.462 | ||
| TIGRFAM | 292 | 315 | 24 | 2.20E-04 | ||
| Pfam | 322 | 371 | 50 | 3.50E-20 | ||
| ProSiteProfiles | 323 | 357 | 35 | 12.814 | ||
| TIGRFAM | 327 | 359 | 33 | 9.40E-10 | ||
| ProSiteProfiles | 358 | 392 | 35 | 11.882 | ||
| TIGRFAM | 360 | 392 | 33 | 8.50E-08 | ||
| ProSiteProfiles | 393 | 427 | 35 | 5.229 | ||
| ProSiteProfiles | 428 | 458 | 31 | 5.799 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0426270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0426270.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.