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Lj3g3v0428420.1

Overview

Field Value
Gene ID Lj3g3v0428420
Transcript ID Lj3g3v0428420.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356544082|ref|XP_003540484.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22904:SF374
72 337 266 7.60E-197 –
PANTHER
PTHR22904
72 337 266 7.60E-197 –
SMART
SM00028
103 136 34 32
IPR019734
ProSiteProfiles
PS50005
103 136 34 6.461
IPR019734
ProSiteProfiles
PS50293
103 204 102 16.233
IPR013026
Gene3D
G3DSA:1.25.40.10
107 229 123 7.90E-30
IPR011990
ProSiteProfiles
PS50005
137 170 34 8.791
IPR019734
SMART
SM00028
137 170 34 2.70E-05
IPR019734
SUPERFAMILY
SSF52833
140 335 196 7.60E-29
IPR012336
SMART
SM00028
171 204 34 79
IPR019734
Gene3D
G3DSA:3.40.30.10
242 334 93 1.60E-18
IPR012336
CDD
cd02947
242 323 82 8.53E-21 –
Pfam
PF00085
243 331 89 4.80E-13
IPR013766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0045454
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0428420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0428420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.