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Lj3g3v0428420.2

Overview

Field Value
Gene ID Lj3g3v0428420
Transcript ID Lj3g3v0428420.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356577383|ref|XP_003556806.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 146 146 – –
MobiDBLite
mobidb-lite
173 225 53 – –
PANTHER
PTHR22904:SF374
212 431 220 1.40E-118 –
PANTHER
PTHR22904
212 431 220 1.40E-118 –
Gene3D
G3DSA:1.25.40.10
223 339 117 4.00E-24
IPR011990
SMART
SM00028
224 257 34 0.12
IPR019734
ProSiteProfiles
PS50005
224 257 34 9.558
IPR019734
ProSiteProfiles
PS50293
224 315 92 17.21
IPR013026
SUPERFAMILY
SSF48452
224 399 176 5.80E-26
IPR011990
Pfam
PF13432
230 290 61 9.50E-09 –
ProSiteProfiles
PS50005
258 291 34 6.815
IPR019734
SMART
SM00028
258 291 34 0.0013
IPR019734
SMART
SM00028
368 401 34 8
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0428420.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0428420.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.