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Lj3g3v0428420.3

Overview

Field Value
Gene ID Lj3g3v0428420
Transcript ID Lj3g3v0428420.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356577383|ref|XP_003556806.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22904:SF374
3 260 258 6.10E-173 –
PANTHER
PTHR22904
3 260 258 6.10E-173 –
Gene3D
G3DSA:1.25.40.10
16 127 112 1.80E-08
IPR011990
SUPERFAMILY
SSF48452
35 128 94 4.00E-09
IPR011990
SMART
SM00028
37 70 34 8
IPR019734
SMART
SM00028
85 118 34 3
IPR019734
ProSiteProfiles
PS50293
85 232 148 17.682
IPR013026
ProSiteProfiles
PS50005
85 118 34 7.877
IPR019734
Pfam
PF13181
89 117 29 0.0036
IPR019734
ProSiteProfiles
PS50005
131 164 34 6.461
IPR019734
SMART
SM00028
131 164 34 32
IPR019734
Gene3D
G3DSA:1.25.40.10
134 248 115 1.20E-29
IPR011990
SUPERFAMILY
SSF48452
135 248 114 3.40E-27
IPR011990
ProSiteProfiles
PS50005
165 198 34 8.791
IPR019734
SMART
SM00028
165 198 34 2.70E-05
IPR019734
SMART
SM00028
199 232 34 79
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0428420.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0428420.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.