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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0439840 |
| Transcript ID | Lj3g3v0439840.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane protein 87B-like [Glycine max] gi|356520814|ref|XP_003529055.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 10 | 10 | – | – | |
| TMHMM | 10 | 32 | 23 | – | – | |
| Phobius | 11 | 22 | 12 | – | – | |
| PANTHER | 13 | 508 | 496 | 3.70E-213 | ||
| PANTHER | 13 | 508 | 496 | 3.70E-213 | – | |
| Phobius | 23 | 26 | 4 | – | – | |
| Phobius | 27 | 203 | 177 | – | – | |
| Pfam | 165 | 453 | 289 | 5.40E-107 | ||
| TMHMM | 171 | 193 | 23 | – | – | |
| Phobius | 204 | 227 | 24 | – | – | |
| TMHMM | 208 | 230 | 23 | – | – | |
| Phobius | 228 | 238 | 11 | – | – | |
| TMHMM | 237 | 259 | 23 | – | – | |
| Phobius | 239 | 259 | 21 | – | – | |
| Phobius | 260 | 273 | 14 | – | – | |
| TMHMM | 274 | 296 | 23 | – | – | |
| Phobius | 274 | 300 | 27 | – | – | |
| Phobius | 301 | 311 | 11 | – | – | |
| Phobius | 312 | 330 | 19 | – | – | |
| TMHMM | 316 | 333 | 18 | – | – | |
| Phobius | 331 | 349 | 19 | – | – | |
| TMHMM | 348 | 370 | 23 | – | – | |
| Phobius | 350 | 370 | 21 | – | – | |
| Coils | 366 | 386 | 21 | – | – | |
| Phobius | 371 | 390 | 20 | – | – | |
| Phobius | 391 | 412 | 22 | – | – | |
| TMHMM | 391 | 413 | 23 | – | – | |
| Phobius | 413 | 423 | 11 | – | – | |
| Phobius | 424 | 448 | 25 | – | – | |
| TMHMM | 428 | 450 | 23 | – | – | |
| Phobius | 449 | 508 | 60 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v0439840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0439840.1, powered by CORGI.
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