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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0461740 |
| Transcript ID | Lj3g3v0461740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Glycine max] gi|356577722|ref|XP_003556972.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| ProSiteProfiles | 57 | 91 | 35 | 5.382 | ||
| PANTHER | 81 | 367 | 287 | 0 | – | |
| PANTHER | 81 | 367 | 287 | 0 | – | |
| ProSiteProfiles | 92 | 122 | 31 | 8.309 | ||
| Pfam | 97 | 122 | 26 | 0.0072 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.073 | ||
| Pfam | 126 | 156 | 31 | 0.001 | ||
| TIGRFAM | 126 | 160 | 35 | 3.00E-06 | ||
| ProSiteProfiles | 159 | 193 | 35 | 5.097 | ||
| ProSiteProfiles | 195 | 226 | 32 | 6.96 | ||
| Gene3D | 225 | 274 | 50 | 2.00E-06 | ||
| ProSiteProfiles | 227 | 261 | 35 | 11.082 | ||
| TIGRFAM | 229 | 262 | 34 | 1.30E-04 | ||
| Pfam | 229 | 258 | 30 | 1.30E-04 | ||
| ProSiteProfiles | 262 | 296 | 35 | 6.314 | ||
| ProSiteProfiles | 331 | 366 | 36 | 11.356 | ||
| Pfam | 331 | 379 | 49 | 2.30E-12 | ||
| ProSiteProfiles | 367 | 401 | 35 | 7.015 | ||
| ProSiteProfiles | 402 | 436 | 35 | 7.366 | ||
| PANTHER | 403 | 711 | 309 | 0 | – | |
| PANTHER | 403 | 711 | 309 | 0 | – | |
| Gene3D | 405 | 460 | 56 | 2.00E-06 | ||
| TIGRFAM | 407 | 433 | 27 | 0.0032 | ||
| Pfam | 407 | 432 | 26 | 0.006 | ||
| ProSiteProfiles | 467 | 501 | 35 | 6.423 | ||
| ProSiteProfiles | 502 | 532 | 31 | 8.528 | ||
| Gene3D | 503 | 533 | 31 | 2.00E-06 | ||
| TIGRFAM | 507 | 533 | 27 | 0.002 | ||
| ProSiteProfiles | 533 | 567 | 35 | 12.945 | ||
| Pfam | 533 | 580 | 48 | 9.70E-13 | ||
| TIGRFAM | 535 | 568 | 34 | 9.70E-09 | ||
| ProSiteProfiles | 568 | 603 | 36 | 7.98 | ||
| ProSiteProfiles | 604 | 634 | 31 | 6.675 | ||
| Pfam | 608 | 631 | 24 | 0.095 | ||
| Gene3D | 634 | 690 | 57 | 2.00E-06 | ||
| ProSiteProfiles | 636 | 666 | 31 | 5.064 | ||
| ProSiteProfiles | 670 | 704 | 35 | 7.443 | ||
| Pfam | 707 | 830 | 124 | 3.30E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v0461740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0461740.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.