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Lj3g3v0599580.1

Overview

Field Value
Gene ID Lj3g3v0599580
Transcript ID Lj3g3v0599580.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max] gi|356520746|ref|XP_003529021.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11986:SF92
6 464 459 8.10E-286 –
PANTHER
PTHR11986
6 464 459 8.10E-286
IPR005814
Gene3D
G3DSA:3.90.1150.10
64 119 56 1.30E-38
IPR015422
CDD
cd00610
69 460 392 8.25E-153
IPR005814
Hamap
MF_01107
73 461 389 43.255
IPR004636
TIGRFAM
TIGR00707
75 460 386 3.10E-144
IPR004636
SUPERFAMILY
SSF53383
76 460 385 1.06E-122
IPR015424
Pfam
PF00202
83 460 378 2.90E-113
IPR005814
Gene3D
G3DSA:3.40.640.10
123 367 245 8.70E-89
IPR015421
ProSitePatterns
PS00600
286 323 38 –
IPR005814
Gene3D
G3DSA:3.90.1150.10
370 460 91 1.30E-38
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006525
Biological process Arginine metabolic process The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj3g3v0599580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0599580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.