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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0642450 |
| Transcript ID | Lj3g3v0642450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] gi|449467070|ref|XP_004151248.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 463 | 456 | 5.80E-274 | – | |
| ProSiteProfiles | 52 | 86 | 35 | 6.511 | ||
| ProSiteProfiles | 87 | 121 | 35 | 5.525 | ||
| ProSiteProfiles | 122 | 152 | 31 | 7.114 | ||
| Pfam | 127 | 151 | 25 | 0.24 | ||
| ProSiteProfiles | 153 | 183 | 31 | 9.328 | ||
| TIGRFAM | 156 | 185 | 30 | 1.60E-05 | ||
| Gene3D | 182 | 236 | 55 | 3.10E-04 | ||
| Pfam | 184 | 231 | 48 | 4.50E-11 | ||
| ProSiteProfiles | 184 | 218 | 35 | 13.307 | ||
| TIGRFAM | 187 | 220 | 34 | 3.00E-09 | ||
| ProSiteProfiles | 219 | 253 | 35 | 6.27 | ||
| ProSiteProfiles | 254 | 284 | 31 | 9.799 | ||
| TIGRFAM | 256 | 284 | 29 | 4.30E-06 | ||
| Pfam | 257 | 284 | 28 | 3.60E-05 | ||
| Pfam | 285 | 332 | 48 | 1.20E-09 | ||
| ProSiteProfiles | 285 | 319 | 35 | 11.992 | ||
| TIGRFAM | 287 | 320 | 34 | 5.90E-08 | ||
| Gene3D | 288 | 321 | 34 | 3.10E-04 | ||
| ProSiteProfiles | 320 | 355 | 36 | 7.629 | ||
| ProSiteProfiles | 356 | 386 | 31 | 7.158 | ||
| Gene3D | 357 | 441 | 85 | 3.10E-04 | ||
| Pfam | 359 | 383 | 25 | 0.074 | ||
| ProSiteProfiles | 388 | 418 | 31 | 5.283 | ||
| ProSiteProfiles | 422 | 456 | 35 | 8.868 | ||
| Pfam | 426 | 454 | 29 | 0.027 | ||
| Pfam | 458 | 582 | 125 | 1.60E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v0642450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0642450.1, powered by CORGI.
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