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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0642490 |
| Transcript ID | Lj3g3v0642490.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polygalacturonase-like [Glycine max] gi|356503157|ref|XP_003520378.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| PANTHER | 1 | 393 | 393 | 9.40E-248 | – | |
| PANTHER | 1 | 393 | 393 | 9.40E-248 | – | |
| Phobius | 7 | 18 | 12 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| SUPERFAMILY | 13 | 393 | 381 | 1.24E-117 | ||
| Gene3D | 14 | 392 | 379 | 7.70E-121 | ||
| Phobius | 19 | 23 | 5 | – | – | |
| Phobius | 24 | 393 | 370 | – | – | |
| Pfam | 55 | 377 | 323 | 4.60E-84 | ||
| SMART | 178 | 204 | 27 | 170 | ||
| SMART | 205 | 226 | 22 | 850 | ||
| SMART | 228 | 248 | 21 | 3100 | ||
| ProSitePatterns | 235 | 248 | 14 | – | ||
| SMART | 258 | 279 | 22 | 60 | ||
| SMART | 288 | 309 | 22 | 4000 | ||
| SMART | 322 | 362 | 41 | 5800 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj3g3v0642490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0642490.1, powered by CORGI.
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