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Lj3g3v0743580.1

Overview

Field Value
Gene ID Lj3g3v0743580
Transcript ID Lj3g3v0743580.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable prefoldin subunit 2-like [Glycine max] gi|356517732|ref|XP_003527540.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 16 16 – –
TMHMM
TMhelix
13 35 23 – –
Phobius
TRANSMEMBRANE
17 38 22 – –
Phobius
CYTOPLASMIC_DOMAIN
39 185 147 – –
PANTHER
PTHR13303
39 185 147 1.60E-73
IPR027235
Pfam
PF01920
53 157 105 2.60E-24
IPR002777
SUPERFAMILY
SSF46579
53 154 102 3.27E-22
IPR009053
Gene3D
G3DSA:1.10.287.370
53 152 100 9.50E-13
IPR009053
Coils
Coil
59 79 21 – –
Coils
Coil
116 150 35 – –
MobiDBLite
mobidb-lite
162 185 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0016272
Cellular component Prefoldin complex A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v0743580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0743580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.