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Lj3g3v0797430.1

Overview

Field Value
Gene ID Lj3g3v0797430
Transcript ID Lj3g3v0797430.1
Lotus japonicus genome version MG20 v3.0
Description Pectinesterase [Medicago truncatula] gi|357456165|ref|XP_003598363.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 25 25 – –
PANTHER
PTHR31707:SF48
23 571 549 0 –
PANTHER
PTHR31707
23 571 549 0 –
TMHMM
TMhelix
26 48 23 – –
Phobius
TRANSMEMBRANE
26 48 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
49 571 523 – –
TIGRFAM
TIGR01614
54 221 168 2.50E-21
IPR006501
SMART
SM00856
63 217 155 7.40E-35
IPR006501
Gene3D
G3DSA:1.20.140.40
65 221 157 2.50E-31
IPR006501
Pfam
PF04043
67 217 151 2.70E-25
IPR006501
SUPERFAMILY
SSF101148
67 221 155 3.79E-30
IPR006501
CDD
cd15798
70 223 154 4.39E-39 –
SUPERFAMILY
SSF51126
262 568 307 1.81E-104
IPR011050
Gene3D
G3DSA:2.160.20.10
263 568 306 1.10E-114
IPR012334
Pfam
PF01095
265 557 293 7.50E-138
IPR000070
ProSitePatterns
PS00503
409 418 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj3g3v0797430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0797430.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.