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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0807580 |
| Transcript ID | Lj3g3v0807580.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | CrcB-like protein [Medicago truncatula] gi|357455675|ref|XP_003598118.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 74 | 74 | – | – | |
| MobiDBLite | 1 | 36 | 36 | – | – | |
| PANTHER | 32 | 338 | 307 | 6.30E-110 | – | |
| PANTHER | 32 | 338 | 307 | 6.30E-110 | – | |
| TMHMM | 75 | 97 | 23 | – | – | |
| Phobius | 75 | 101 | 27 | – | – | |
| Pfam | 81 | 194 | 114 | 3.20E-15 | ||
| Phobius | 102 | 112 | 11 | – | – | |
| TMHMM | 112 | 134 | 23 | – | – | |
| Phobius | 113 | 133 | 21 | – | – | |
| Phobius | 134 | 144 | 11 | – | – | |
| TMHMM | 141 | 163 | 23 | – | – | |
| Phobius | 145 | 165 | 21 | – | – | |
| Phobius | 166 | 176 | 11 | – | – | |
| Phobius | 177 | 200 | 24 | – | – | |
| TMHMM | 178 | 200 | 23 | – | – | |
| Phobius | 201 | 231 | 31 | – | – | |
| TMHMM | 232 | 254 | 23 | – | – | |
| Phobius | 232 | 252 | 21 | – | – | |
| Phobius | 253 | 263 | 11 | – | – | |
| TMHMM | 264 | 283 | 20 | – | – | |
| Phobius | 264 | 283 | 20 | – | – | |
| Phobius | 284 | 294 | 11 | – | – | |
| Phobius | 295 | 318 | 24 | – | – | |
| TMHMM | 296 | 318 | 23 | – | – | |
| Phobius | 319 | 338 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v0807580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0807580.1, powered by CORGI.
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