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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0824960 |
| Transcript ID | Lj3g3v0824960.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like [Glycine max] gi|356552149|ref|XP_003544432.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 14 | 60 | 47 | – | – | |
| PANTHER | 23 | 478 | 456 | 8.10E-269 | – | |
| PANTHER | 23 | 478 | 456 | 8.10E-269 | – | |
| Gene3D | 100 | 215 | 116 | 8.40E-06 | ||
| ProSiteProfiles | 127 | 161 | 35 | 10.095 | ||
| TIGRFAM | 130 | 163 | 34 | 1.70E-04 | ||
| Pfam | 130 | 159 | 30 | 0.0085 | ||
| Pfam | 161 | 211 | 51 | 1.70E-10 | ||
| ProSiteProfiles | 162 | 192 | 31 | 8.035 | ||
| TIGRFAM | 165 | 199 | 35 | 8.60E-05 | ||
| ProSiteProfiles | 198 | 232 | 35 | 9.208 | ||
| TIGRFAM | 200 | 226 | 27 | 0.0024 | ||
| ProSiteProfiles | 233 | 267 | 35 | 10.194 | ||
| TIGRFAM | 235 | 270 | 36 | 2.00E-06 | ||
| Pfam | 235 | 264 | 30 | 3.70E-06 | ||
| Pfam | 268 | 316 | 49 | 2.60E-09 | ||
| ProSiteProfiles | 269 | 303 | 35 | 10.084 | ||
| TIGRFAM | 271 | 305 | 35 | 7.30E-06 | ||
| ProSiteProfiles | 304 | 338 | 35 | 10.83 | ||
| TIGRFAM | 307 | 339 | 33 | 8.30E-08 | ||
| Pfam | 338 | 387 | 50 | 2.30E-12 | ||
| ProSiteProfiles | 339 | 373 | 35 | 11.63 | ||
| TIGRFAM | 341 | 374 | 34 | 2.10E-07 | ||
| Gene3D | 342 | 394 | 53 | 8.40E-06 | ||
| ProSiteProfiles | 374 | 408 | 35 | 9.438 | ||
| TIGRFAM | 376 | 407 | 32 | 1.50E-04 | ||
| ProSiteProfiles | 409 | 443 | 35 | 10.6 | ||
| Pfam | 412 | 455 | 44 | 2.70E-10 | ||
| TIGRFAM | 413 | 445 | 33 | 5.60E-08 | ||
| ProSiteProfiles | 444 | 474 | 31 | 7.366 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0824960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0824960.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.