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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0824970 |
| Transcript ID | Lj3g3v0824970.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357458279|ref|XP_003599420.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 348 | 348 | 1.50E-229 | – | |
| PANTHER | 1 | 348 | 348 | 1.50E-229 | – | |
| ProSiteProfiles | 1 | 26 | 26 | 7.563 | ||
| Pfam | 26 | 76 | 51 | 1.00E-10 | ||
| ProSiteProfiles | 27 | 57 | 31 | 8.035 | ||
| Gene3D | 28 | 80 | 53 | 2.40E-04 | ||
| TIGRFAM | 30 | 64 | 35 | 5.50E-05 | ||
| ProSiteProfiles | 63 | 97 | 35 | 9.208 | ||
| TIGRFAM | 65 | 91 | 27 | 0.0016 | ||
| ProSiteProfiles | 98 | 132 | 35 | 10.194 | ||
| TIGRFAM | 100 | 135 | 36 | 1.30E-06 | ||
| Pfam | 100 | 129 | 30 | 2.40E-06 | ||
| Pfam | 133 | 181 | 49 | 1.60E-09 | ||
| ProSiteProfiles | 134 | 168 | 35 | 10.084 | ||
| TIGRFAM | 136 | 170 | 35 | 4.70E-06 | ||
| ProSiteProfiles | 169 | 203 | 35 | 10.83 | ||
| TIGRFAM | 172 | 204 | 33 | 5.30E-08 | ||
| Pfam | 203 | 252 | 50 | 1.40E-12 | ||
| ProSiteProfiles | 204 | 238 | 35 | 11.63 | ||
| TIGRFAM | 206 | 239 | 34 | 1.30E-07 | ||
| Gene3D | 207 | 266 | 60 | 2.40E-04 | ||
| ProSiteProfiles | 239 | 273 | 35 | 9.438 | ||
| TIGRFAM | 241 | 272 | 32 | 9.70E-05 | ||
| ProSiteProfiles | 274 | 308 | 35 | 10.6 | ||
| Pfam | 277 | 320 | 44 | 1.70E-10 | ||
| TIGRFAM | 278 | 310 | 33 | 3.60E-08 | ||
| ProSiteProfiles | 309 | 339 | 31 | 7.366 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0824970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0824970.1, powered by CORGI.
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