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Lj3g3v0850580.1

Overview

Field Value
Gene ID Lj3g3v0850580
Transcript ID Lj3g3v0850580.1
Lotus japonicus genome version MG20 v3.0
Description La-related protein [Medicago truncatula] gi|357447339|ref|XP_003593945.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50961
69 125 57 21.951
IPR006630
Gene3D
G3DSA:1.10.10.10
71 125 55 4.00E-21
IPR011991
PANTHER
PTHR22792
72 125 54 3.60E-24 –
SUPERFAMILY
SSF46785
72 125 54 3.17E-18
IPR011991
SMART
SM00715
73 125 53 7.50E-09
IPR006630
Pfam
PF05383
79 125 47 9.30E-21
IPR006630
PRINTS
PR00302
82 99 18 4.40E-07
IPR002344
PRINTS
PR00302
108 123 16 4.40E-07
IPR002344

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:1990904
Cellular component Ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v0850580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0850580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.