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Lj3g3v0927080.1

Overview

Field Value
Gene ID Lj3g3v0927080
Transcript ID Lj3g3v0927080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HOX27-like [Glycine max] gi|356557110|ref|XP_003546861.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 74 74 – –
PANTHER
PTHR24326
56 71 16 1.20E-102 –
PANTHER
PTHR24326:SF266
56 71 16 1.20E-102 –
MobiDBLite
mobidb-lite
149 190 42 – –
Gene3D
G3DSA:1.10.10.60
161 243 83 1.40E-18
IPR009057
PANTHER
PTHR24326:SF266
163 304 142 1.20E-102 –
PANTHER
PTHR24326
163 304 142 1.20E-102 –
SUPERFAMILY
SSF46689
171 243 73 4.71E-19
IPR009057
ProSiteProfiles
PS50071
182 242 61 17.167
IPR001356
SMART
SM00389
184 246 63 2.20E-16
IPR001356
CDD
cd00086
186 243 58 1.86E-15 –
Pfam
PF00046
186 240 55 2.60E-15
IPR001356
ProSitePatterns
PS00027
217 240 24 –
IPR017970
SMART
SM00340
242 285 44 4.80E-25
IPR003106
Pfam
PF02183
242 276 35 1.60E-10
IPR003106
Coils
Coil
255 278 24 – –
MobiDBLite
mobidb-lite
301 335 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v0927080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0927080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.