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Lj3g3v0928110.1

Overview

Field	Value
Gene ID	Lj3g3v0928110
Transcript ID	Lj3g3v0928110.1
Lotus japonicus genome version	MG20 v3.0
Description	RING finger protein [Medicago truncatula] gi\|357470139\|ref\|XP_003605354.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12313 View details on PTHR12313 Search for proteins/transripts with this domain View external data on PTHR12313	9	206	198	4.60E-53	–
PANTHER	PTHR12313:SF0 View details on PTHR12313:SF0 Search for proteins/transripts with this domain View external data on PTHR12313:SF0	9	206	198	4.60E-53	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	23	43	21	–	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	84	142	59	2.00E-15	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	87	138	52	1.99E-14	–
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	88	133	46	9.45E-10	–
Pfam	PF13920 View details on PF13920 Search for proteins/transripts with this domain View external data on PF13920	88	135	48	2.10E-08	–
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	89	129	41	2.90E-08	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	89	130	42	12.711	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	209	237	29	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	322	345	24	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v0928110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0928110.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.