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Lj3g3v0948220.1

Overview

Field Value
Gene ID Lj3g3v0948220
Transcript ID Lj3g3v0948220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein ODORANT1-like [Glycine max] gi|356528637|ref|XP_003532906.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 194 194 4.20E-128 –
PANTHER
PTHR10641:SF487
1 194 194 4.20E-128 –
Gene3D
G3DSA:1.10.10.60
5 63 59 2.40E-26
IPR009057
ProSiteProfiles
PS51294
8 60 53 19.071
IPR017930
SUPERFAMILY
SSF46689
10 107 98 1.17E-29
IPR009057
SMART
SM00717
12 62 51 3.10E-13
IPR001005
Pfam
PF00249
13 60 48 6.40E-16
IPR001005
CDD
cd00167
16 60 45 6.42E-11 –
ProSiteProfiles
PS51294
61 115 55 26.372
IPR017930
Gene3D
G3DSA:1.10.10.60
64 116 53 2.60E-26
IPR009057
SMART
SM00717
65 113 49 1.90E-16
IPR001005
Pfam
PF00249
66 109 44 9.20E-16
IPR001005
CDD
cd00167
68 108 41 1.11E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v0948220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0948220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.