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Lj3g3v0962150.1

Overview

Field Value
Gene ID Lj3g3v0962150
Transcript ID Lj3g3v0962150.1
Lotus japonicus genome version MG20 v3.0
Description R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330290|gb|AFK29423.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
4 193 190 4.10E-121 –
PANTHER
PTHR10641:SF462
4 193 190 4.10E-121 –
Gene3D
G3DSA:1.10.10.60
7 66 60 1.50E-25
IPR009057
ProSiteProfiles
PS51294
11 63 53 16.298
IPR017930
SUPERFAMILY
SSF46689
14 110 97 5.87E-31
IPR009057
SMART
SM00717
15 65 51 1.30E-13
IPR001005
Pfam
PF00249
16 63 48 4.90E-16
IPR001005
CDD
cd00167
18 63 46 6.45E-11 –
ProSiteProfiles
PS51294
64 118 55 26.314
IPR017930
Gene3D
G3DSA:1.10.10.60
67 118 52 1.70E-27
IPR009057
SMART
SM00717
68 116 49 4.30E-15
IPR001005
Pfam
PF00249
69 114 46 1.70E-15
IPR001005
CDD
cd00167
71 114 44 9.85E-11 –
MobiDBLite
mobidb-lite
117 160 44 – –
PANTHER
PTHR10641
251 361 111 4.10E-121 –
PANTHER
PTHR10641:SF462
251 361 111 4.10E-121 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v0962150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0962150.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.