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Lj3g3v1074990.2

Overview

Field Value
Gene ID Lj3g3v1074990
Transcript ID Lj3g3v1074990.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] gi|109729905|tpg|DAA05766.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326:SF279
8 111 104 3.60E-271 –
PANTHER
PTHR24326
8 111 104 3.60E-271 –
ProSiteProfiles
PS50071
17 81 65 14.803
IPR001356
SUPERFAMILY
SSF46689
18 85 68 8.13E-16
IPR009057
SMART
SM00389
19 85 67 2.80E-13
IPR001356
CDD
cd00086
22 82 61 2.71E-14 –
Pfam
PF00046
23 80 58 1.40E-14
IPR001356
Gene3D
G3DSA:1.10.10.60
24 80 57 1.40E-17
IPR009057
CDD
cd14686
74 113 40 5.30E-06 –
Coils
Coil
77 118 42 – –
MobiDBLite
mobidb-lite
127 152 26 – –
ProSiteProfiles
PS50848
152 380 229 26.147
IPR002913
CDD
cd08875
156 372 217 5.57E-66 –
SMART
SM00234
161 371 211 4.70E-44
IPR002913
Gene3D
G3DSA:3.30.530.20
161 348 188 1.60E-20
IPR023393
SUPERFAMILY
SSF55961
161 373 213 4.53E-34 –
Pfam
PF01852
162 370 209 1.10E-47
IPR002913
PANTHER
PTHR24326:SF279
548 607 60 3.60E-271 –
PANTHER
PTHR24326
548 607 60 3.60E-271 –
PANTHER
PTHR24326:SF279
628 840 213 3.60E-271 –
PANTHER
PTHR24326
628 840 213 3.60E-271 –
Pfam
PF08670
697 840 144 5.60E-47
IPR013978

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v1074990.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1074990.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.