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Lj3g3v1086330.1

Overview

Field Value
Gene ID Lj3g3v1086330
Transcript ID Lj3g3v1086330.1
Lotus japonicus genome version MG20 v3.0
Description Pleckstrin (PH) and lipid-binding START domains-containing protein isoform 1 [Theobroma cacao] gi|508787129|gb|EOY34385.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
SUPERFAMILY
SSF50729
29 141 113 3.36E-11
IPR011993
Gene3D
G3DSA:2.30.29.30
33 140 108 2.80E-10
IPR011993
ProSiteProfiles
PS50003
33 141 109 8.989
IPR001849
PANTHER
PTHR12136:SF41
34 744 711 0 –
PANTHER
PTHR12136
34 744 711 0 –
SMART
SM00233
34 143 110 2.10E-07
IPR001849
CDD
cd00821
36 136 101 2.84E-06 –
Pfam
PF00169
36 139 104 2.50E-07
IPR001849
SUPERFAMILY
SSF55961
168 350 183 1.79E-39 –
CDD
cd00177
170 349 180 2.17E-41 –
ProSiteProfiles
PS50848
174 345 172 22.423
IPR002913
SMART
SM00234
176 378 203 5.60E-05
IPR002913
Gene3D
G3DSA:3.30.530.20
181 376 196 1.40E-38
IPR023393
Pfam
PF01852
213 349 137 4.20E-17
IPR002913
Pfam
PF07059
533 738 206 8.40E-68
IPR009769

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of

Genome browser

LORE1 insertions 43

Expression data

Expression pattern

Expression pattern of Lj3g3v1086330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1086330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.