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Lj3g3v1411740.1

Overview

Field Value
Gene ID Lj3g3v1411740
Transcript ID Lj3g3v1411740.1
Lotus japonicus genome version MG20 v3.0
Description TATA-box-binding protein [Glycine max] gi|351727953|ref|NP_001238202.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10126
1 197 197 4.50E-161
IPR000814
PANTHER
PTHR10126:SF23
1 197 197 4.50E-161 –
Hamap
MF_00408
19 198 180 26.834
IPR000814
Gene3D
G3DSA:3.30.310.10
19 105 87 9.80E-39
IPR012295
SUPERFAMILY
SSF55945
21 114 94 2.67E-32 –
CDD
cd04516
22 195 174 1.70E-125
IPR033710
Pfam
PF00352
24 103 80 6.30E-31
IPR000814
PRINTS
PR00686
25 40 16 2.90E-66
IPR000814
PRINTS
PR00686
49 68 20 2.90E-66
IPR000814
PRINTS
PR00686
68 86 19 2.90E-66
IPR000814
Gene3D
G3DSA:3.30.310.10
106 196 91 3.90E-34
IPR012295
Pfam
PF00352
112 194 83 2.90E-30
IPR000814
SUPERFAMILY
SSF55945
112 198 87 1.02E-28 –
PRINTS
PR00686
115 131 17 2.90E-66
IPR000814
PRINTS
PR00686
139 154 16 2.90E-66
IPR000814
PRINTS
PR00686
158 174 17 2.90E-66
IPR000814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006352
Biological process DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj3g3v1411740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1411740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.