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Lj3g3v1517390.1

Overview

Field Value
Gene ID Lj3g3v1517390
Transcript ID Lj3g3v1517390.1
Lotus japonicus genome version MG20 v3.0
Description RecName: Full=Ras-related protein Rab11Egi|1370150|emb|CAA98181.1| RAB11E [Lotus japonicus] gi|3024529|sp|Q40195.1|RB11E_LOTJA
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
4 218 215 1.20E-164 –
PANTHER
PTHR24073:SF544
4 218 215 1.20E-164 –
Gene3D
G3DSA:3.40.50.300
6 206 201 1.40E-71
IPR027417
SUPERFAMILY
SSF52540
9 179 171 2.07E-57
IPR027417
ProSiteProfiles
PS51419
9 216 208 35.226 –
CDD
cd01868
11 175 165 4.95E-125 –
SMART
SM00173
11 177 167 3.00E-27 –
TIGRFAM
TIGR00231
12 170 159 1.90E-37
IPR005225
SMART
SM00175
14 177 164 2.20E-108 –
PRINTS
PR00449
14 35 22 6.40E-43 –
Pfam
PF00071
15 175 161 2.70E-60
IPR001806
SMART
SM00174
16 173 158 1.40E-11 –
SMART
SM00176
19 217 199 3.40E-05 –
PRINTS
PR00449
37 53 17 6.40E-43 –
PRINTS
PR00449
55 77 23 6.40E-43 –
PRINTS
PR00449
117 130 14 6.40E-43 –
PRINTS
PR00449
152 174 23 6.40E-43 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 34

Expression data

Expression pattern

Expression pattern of Lj3g3v1517390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1517390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.