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Lj3g3v1541340.1

Overview

Field Value
Gene ID Lj3g3v1541340
Transcript ID Lj3g3v1541340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54236
1 92 92 2.12E-17
IPR029071
Gene3D
G3DSA:3.10.20.90
1 71 71 1.00E-16 –
SMART
SM00213
1 72 72 3.20E-06
IPR000626
ProSiteProfiles
PS50053
1 76 76 15.492
IPR000626
PANTHER
PTHR10621
2 105 104 9.40E-35 –
PANTHER
PTHR10621:SF5
2 105 104 9.40E-35 –
Pfam
PF00240
8 73 66 5.00E-14
IPR000626
CDD
cd01769
8 72 65 1.86E-09 –
PRINTS
PR00348
11 31 21 1.60E-05
IPR019956
ProSitePatterns
PS00299
27 52 26 –
IPR019954
PRINTS
PR00348
32 52 21 1.60E-05
IPR019956

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v1541340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1541340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.