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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00213
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 194 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.076s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0111459.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr0 48419514 48422238 +
2 domain predictions
1 GO term
Lj0g3v0119929.1
n.a. PREDICTED: ubiquitin-NEDD8-like protein RUB2-like [Glycine max] gi|356525758|ref|XP_003531490.1| chr0 53212482 53215346 +
2 domain predictions
1 GO term
Lj0g3v0175819.1
n.a. Polyubiquitin-A [Triticum urartu] gi|474093556|gb|EMS54972.1| chr0 84897532 84899697 +
2 domain predictions
1 GO term
Lj0g3v0178099.1
n.a. polyubiquitin 10 [Arabidopsis thaliana] gi|240255756|ref|NP_849300.4| chr0 86267534 86269597 -
2 domain predictions
1 GO term
Lj0g3v0201989.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 99944694 99948327 -
2 domain predictions
1 GO term
Lj0g3v0266149.1
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820187 -
2 domain predictions
1 GO term
Lj0g3v0266149.2
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820410 -
2 domain predictions
1 GO term
Lj0g3v0279589.1
n.a. PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1| chr0 145125579 145128149 +
2 domain predictions
1 GO term
Lj0g3v0307289.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 160407531 160409807 -
2 domain predictions
1 GO term
Lj0g3v0316729.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165460767 165463414 +
2 domain predictions
1 GO term
Lj0g3v0328939.1
n.a. polyubiquitin, partial [Wolffia australiana] gi|374412404|gb|AEZ49160.1| chr0 171964218 171965972 -
2 domain predictions
1 GO term
Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
2 domain predictions
1 GO term
Lj0g3v0358289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr0 188599547 188601878 -
2 domain predictions
1 GO term
Lj1g3v0052520.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr1 498773 499090 +
2 domain predictions
1 GO term
Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
2 domain predictions
1 GO term
Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
2 domain predictions
1 GO term
Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
2 domain predictions
1 GO term
Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
2 domain predictions
1 GO term
Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
2 domain predictions
1 GO term
Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
2 domain predictions
1 GO term
Lj2g3v1415010.1
n.a. Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| chr2 22244732 22245790 -
2 domain predictions
1 GO term
Lj2g3v1549760.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
2 domain predictions
1 GO term
Lj2g3v1549760.2
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
2 domain predictions
1 GO term
Lj2g3v1644370.2
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25542791 -
2 domain predictions
1 GO term
Lj2g3v1829920.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr2 27648784 27649422 +
2 domain predictions
1 GO term
Lj2g3v2197670.2
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868970 -
2 domain predictions
1 GO term
Lj2g3v2197680.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868706 -
2 domain predictions
1 GO term
Lj2g3v2879520.1
n.a. PREDICTED: small ubiquitin-related modifier 2-like [Fragaria vesca subsp]. vesca] gi|470136628|ref|XP_004304088.1| chr2 37534649 37537320 +
2 domain predictions
1 GO term
Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
2 domain predictions
1 GO term
Lj3g3v0950900.1
n.a. n.a. chr3 12357900 12359259 +
2 domain predictions
1 GO term
Lj3g3v0950910.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 12358086 12360111 -
2 domain predictions
1 GO term
Lj3g3v1340140.1
n.a. PREDICTED: polyubiquitin-like [Glycine max] gi|356547071|ref|XP_003541941.1| chr3 17287739 17288500 -
2 domain predictions
1 GO term
Lj3g3v1541340.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr3 19712064 19712381 +
2 domain predictions
1 GO term
Lj3g3v2027460.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 25966680 25968751 +
2 domain predictions
1 GO term
Lj3g3v2665440.1
n.a. PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Cicer arietinum] gi|502156678|ref|XP_004510593.1| chr3 32536806 32543438 -
2 domain predictions
1 GO term
Lj3g3v2704600.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cicer arietinum] gi|502156184|ref|XP_004510348.1| chr3 33067377 33077433 -
2 domain predictions
1 GO term
Lj3g3v2807960.1
n.a. PREDICTED: pre-mRNA-processing factor 6-like [Glycine max] gi|356543817|ref|XP_003540356.1| chr3 34348727 34352457 -
2 domain predictions
1 GO term
Lj4g3v0120060.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr4 1198249 1204150 +
2 domain predictions
1 GO term
Lj4g3v0473160.1
n.a. ubiquitin-60S ribosomal protein L40 fusion protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331229396|ref|XP_003327364.1| chr4 7196182 7198192 -
2 domain predictions
1 GO term
Lj4g3v0473170.1
n.a. LOC100282068 [Zea mays] gi|226502871|ref|NP_001148453.1| chr4 7200781 7203227 -
2 domain predictions
1 GO term
Lj4g3v1970880.1
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346111 27356209 +
2 domain predictions
1 GO term
Lj4g3v1970880.3
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346306 27353638 +
2 domain predictions
1 GO term
Lj4g3v2690700.1
n.a. PREDICTED: ubiquitin-like domain-containing CTD phosphatase-like [Glycine max] gi|356525365|ref|XP_003531295.1| chr4 36201008 36204305 +
2 domain predictions
1 GO term
Lj5g3v0266930.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
2 domain predictions
1 GO term
Lj5g3v0266930.2
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
2 domain predictions
1 GO term
Lj5g3v0790850.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr5 11384931 11386768 -
2 domain predictions
1 GO term
Lj5g3v1495690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21690545 +
2 domain predictions
1 GO term
Lj5g3v1495690.2
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21691755 +
2 domain predictions
1 GO term
Lj5g3v2060710.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr5 29780747 29782887 -
2 domain predictions
1 GO term
Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
2 domain predictions
1 GO term