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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1729090 |
| Transcript ID | Lj3g3v1729090.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cicer arietinum] gi|502082664|ref|XP_004487236.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | – | – | |
| MobiDBLite | 61 | 323 | 263 | – | – | |
| PANTHER | 153 | 222 | 70 | 0 | – | |
| PANTHER | 153 | 222 | 70 | 0 | – | |
| PANTHER | 394 | 1026 | 633 | 0 | – | |
| PANTHER | 394 | 1026 | 633 | 0 | – | |
| SUPERFAMILY | 561 | 1024 | 464 | 4.25E-116 | ||
| SMART | 567 | 751 | 185 | 8.20E-30 | ||
| Gene3D | 569 | 726 | 158 | 5.50E-52 | ||
| Pfam | 574 | 728 | 155 | 3.10E-07 | ||
| ProSiteProfiles | 579 | 742 | 164 | 19.324 | ||
| CDD | 586 | 724 | 139 | 1.71E-30 | – | |
| CDD | 749 | 910 | 162 | 1.09E-10 | – | |
| ProSiteProfiles | 764 | 944 | 181 | 17.072 | ||
| Pfam | 774 | 903 | 130 | 1.00E-12 | ||
| Gene3D | 775 | 914 | 140 | 1.80E-12 | ||
| SMART | 799 | 903 | 105 | 4.60E-18 | ||
| SMART | 964 | 1026 | 63 | 3.40E-13 | ||
| Pfam | 968 | 1026 | 59 | 3.90E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj3g3v1729090.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1729090.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.