Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v1855350.1

Overview

Field Value
Gene ID Lj3g3v1855350
Transcript ID Lj3g3v1855350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor GAMYB-like [Glycine max] gi|356546292|ref|XP_003541563.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
9 479 471 1.30E-184 –
PANTHER
PTHR10641:SF475
9 479 471 1.30E-184 –
ProSiteProfiles
PS51294
33 89 57 22.57
IPR017930
SMART
SM00717
37 87 51 1.40E-15
IPR001005
SUPERFAMILY
SSF46689
37 132 96 4.12E-29
IPR009057
Pfam
PF00249
38 85 48 2.00E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
39 92 54 5.80E-24
IPR009057
CDD
cd00167
40 85 46 1.66E-12 –
ProSiteProfiles
PS51294
90 140 51 16.597
IPR017930
SMART
SM00717
90 138 49 2.10E-13
IPR001005
Pfam
PF00249
91 134 44 1.00E-12
IPR001005
Gene3D
G3DSA:1.10.10.60
93 138 46 1.30E-22
IPR009057
CDD
cd00167
95 134 40 2.40E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v1855350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1855350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.