Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v1933050.2

Overview

Field Value
Gene ID Lj3g3v1933050
Transcript ID Lj3g3v1933050.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: high mobility group B protein 10-like isoform X1 [Cicer arietinum] gi|502127395|ref|XP_004499691.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 37 37 – –
PANTHER
PTHR13711:SF202
15 137 123 1.90E-105 –
PANTHER
PTHR13711
15 137 123 1.90E-105 –
SMART
SM01014
41 131 91 2.20E-31 –
SUPERFAMILY
SSF46774
42 145 104 1.57E-30
IPR001606
Gene3D
G3DSA:1.10.150.60
44 144 101 7.40E-27
IPR001606
ProSiteProfiles
PS51011
44 135 92 26.917
IPR001606
SMART
SM00501
45 136 92 4.70E-31
IPR001606
Pfam
PF01388
49 131 83 1.00E-18
IPR001606
PANTHER
PTHR13711:SF202
156 230 75 1.90E-105 –
PANTHER
PTHR13711
156 230 75 1.90E-105 –
MobiDBLite
mobidb-lite
240 264 25 – –
PANTHER
PTHR13711:SF202
248 334 87 1.90E-105 –
PANTHER
PTHR13711
248 334 87 1.90E-105 –
SUPERFAMILY
SSF47095
250 335 86 4.06E-19
IPR009071
Gene3D
G3DSA:1.10.30.10
259 335 77 2.40E-16
IPR009071
SMART
SM00398
263 332 70 1.60E-12
IPR009071
Pfam
PF00505
264 331 68 2.90E-11
IPR009071
ProSiteProfiles
PS50118
264 331 68 13.695
IPR009071
CDD
cd01390
264 328 65 1.58E-17 –
MobiDBLite
mobidb-lite
315 338 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj3g3v1933050.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1933050.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.