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Lj3g3v1981190.1

Overview

Field Value
Gene ID Lj3g3v1981190
Transcript ID Lj3g3v1981190.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: splicing factor U2af large subunit A-like [Glycine max] gi|356517814|ref|XP_003527581.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 208 208 – –
PANTHER
PTHR23139
63 117 55 0 –
PANTHER
PTHR23139:SF61
63 117 55 0 –
TIGRFAM
TIGR01642
82 599 518 4.30E-183
IPR006529
PANTHER
PTHR23139
169 204 36 0 –
PANTHER
PTHR23139:SF61
169 204 36 0 –
PANTHER
PTHR23139
229 599 371 0 –
PANTHER
PTHR23139:SF61
229 599 371 0 –
SUPERFAMILY
SSF54928
252 354 103 9.40E-17
IPR012677
Gene3D
G3DSA:3.30.70.330
264 348 85 1.80E-15
IPR012677
CDD
cd12230
267 349 83 2.37E-40 –
ProSiteProfiles
PS50102
268 351 84 13.004
IPR000504
SMART
SM00360
269 347 79 7.30E-14
IPR000504
Pfam
PF00076
270 344 75 7.30E-07
IPR000504
CDD
cd12231
388 464 77 8.55E-43 –
ProSiteProfiles
PS50102
388 466 79 15.494
IPR000504
SUPERFAMILY
SSF54928
389 476 88 4.10E-30
IPR012677
SMART
SM00360
389 462 74 7.80E-21
IPR000504
Gene3D
G3DSA:3.30.70.330
389 466 78 2.10E-21
IPR012677
Pfam
PF00076
390 459 70 3.90E-17
IPR000504
Gene3D
G3DSA:3.30.70.330
502 592 91 1.70E-22
IPR012677
CDD
cd12232
502 590 89 3.32E-40 –
ProSiteProfiles
PS50102
509 595 87 9.047
IPR000504
SMART
SM00360
510 591 82 0.052
IPR000504
SUPERFAMILY
SSF54928
510 592 83 4.10E-30
IPR012677
Pfam
PF00076
527 587 61 1.50E-05
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v1981190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1981190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.