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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006529
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.651s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v1981190.1
n.a. PREDICTED: splicing factor U2af large subunit A-like [Glycine max] gi|356517814|ref|XP_003527581.1| chr3 25394575 25400038 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.1
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70631161 70638824 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.10
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632831 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.11
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70634857 70638149 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.12
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70635265 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.13
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70635326 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.14
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70635326 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.15
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70635634 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.2
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632314 70638149 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.3
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632693 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.4
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632693 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.5
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632693 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.6
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632693 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.7
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD6|I1JZD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632750 70637292 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.8
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632750 70637882 +
2 domain predictions
3 GO terms
LotjaGi3g1v0336200.9
n.a. Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 LjG1.1_chr3 70632750 70637882 +
2 domain predictions
3 GO terms
LotjaGi6g1v0333800.1
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800 LjG1.1_chr6 64843522 64858524 +
2 domain predictions
3 GO terms
LotjaGi6g1v0333800.2
n.a. Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800 LjG1.1_chr6 64850645 64858524 +
2 domain predictions
3 GO terms