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TIGR01642

Source: TIGRFAM

Description

U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

Associated Lotus transcripts 18

Transcript Name Description Predicted domains Domain count
Lj3g3v1981190.1
– PREDICTED: splicing factor U2af large subunit A-like [Glycine max] gi|356517814|ref|XP_003527581.1|
Domains
15
LotjaGi3g1v0336200.1
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
16
LotjaGi3g1v0336200.10
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.11
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
15
LotjaGi3g1v0336200.12
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
15
LotjaGi3g1v0336200.13
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
15
LotjaGi3g1v0336200.14
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
15
LotjaGi3g1v0336200.15
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
16
LotjaGi3g1v0336200.2
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
16
LotjaGi3g1v0336200.3
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.4
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.5
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.6
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.7
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD6|I1JZD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.8
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi3g1v0336200.9
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
Domains
20
LotjaGi6g1v0333800.1
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800
Domains
16
LotjaGi6g1v0333800.2
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.56