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Lj3g3v2027260.1

Overview

Field Value
Gene ID Lj3g3v2027260
Transcript ID Lj3g3v2027260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
PANTHER
PTHR23315
13 126 114 3.90E-71 –
PANTHER
PTHR23315:SF127
13 126 114 3.90E-71 –
SUPERFAMILY
SSF57850
40 121 82 4.41E-18 –
Gene3D
G3DSA:3.30.40.10
49 121 73 9.30E-17
IPR013083
ProSiteProfiles
PS51698
50 124 75 26.716
IPR003613
Pfam
PF04564
52 121 70 1.60E-13
IPR003613
SMART
SM00504
54 117 64 3.90E-10
IPR003613
PANTHER
PTHR23315
143 213 71 3.90E-71 –
PANTHER
PTHR23315:SF127
143 213 71 3.90E-71 –
MobiDBLite
mobidb-lite
164 213 50 – –
Coils
Coil
213 213 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v2027260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2027260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.