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Lj3g3v2037540.1

Overview

Field Value
Gene ID Lj3g3v2037540
Transcript ID Lj3g3v2037540.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502117077|ref|XP_004495691.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 38 38 – –
PANTHER
PTHR31707:SF17
10 571 562 0 –
PANTHER
PTHR31707
10 571 562 0 –
Phobius
TRANSMEMBRANE
12 33 22 – –
TMHMM
TMhelix
12 34 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
34 582 549 – –
TIGRFAM
TIGR01614
40 208 169 9.00E-26
IPR006501
SMART
SM00856
52 204 153 1.80E-36
IPR006501
Gene3D
G3DSA:1.20.140.40
54 208 155 5.80E-35
IPR006501
SUPERFAMILY
SSF101148
56 208 153 4.19E-31
IPR006501
Pfam
PF04043
56 204 149 9.60E-24
IPR006501
CDD
cd15798
59 209 151 2.45E-41 –
Gene3D
G3DSA:2.160.20.10
253 567 315 1.60E-109
IPR012334
SUPERFAMILY
SSF51126
254 566 313 2.11E-101
IPR011050
Pfam
PF01095
256 555 300 3.10E-129
IPR000070
ProSitePatterns
PS00800
281 300 20 –
IPR018040
ProSitePatterns
PS00503
400 409 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v2037540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2037540.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.