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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2236880 |
| Transcript ID | Lj3g3v2236880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Glycine max] gi|356522365|ref|XP_003529817.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 78 | 65 | 0 | – | |
| PANTHER | 14 | 78 | 65 | 0 | – | |
| ProSiteProfiles | 65 | 99 | 35 | 5.36 | ||
| ProSiteProfiles | 135 | 165 | 31 | 7.18 | ||
| TIGRFAM | 140 | 167 | 28 | 0.0011 | ||
| PANTHER | 149 | 403 | 255 | 0 | – | |
| PANTHER | 149 | 403 | 255 | 0 | – | |
| Pfam | 166 | 212 | 47 | 8.00E-09 | ||
| ProSiteProfiles | 166 | 200 | 35 | 12.551 | ||
| Gene3D | 167 | 199 | 33 | 1.70E-05 | ||
| TIGRFAM | 168 | 201 | 34 | 7.20E-06 | ||
| ProSiteProfiles | 201 | 235 | 35 | 5.821 | ||
| Gene3D | 234 | 263 | 30 | 1.70E-05 | ||
| ProSiteProfiles | 236 | 266 | 31 | 8.374 | ||
| TIGRFAM | 240 | 266 | 27 | 0.0022 | ||
| Pfam | 240 | 266 | 27 | 8.40E-04 | ||
| ProSiteProfiles | 267 | 301 | 35 | 10.501 | ||
| TIGRFAM | 269 | 296 | 28 | 3.70E-04 | ||
| Pfam | 269 | 296 | 28 | 1.70E-05 | ||
| ProSiteProfiles | 337 | 367 | 31 | 7.805 | ||
| Pfam | 340 | 363 | 24 | 0.12 | ||
| Pfam | 368 | 414 | 47 | 1.50E-09 | ||
| ProSiteProfiles | 368 | 402 | 35 | 11.915 | ||
| TIGRFAM | 370 | 404 | 35 | 4.80E-07 | ||
| ProSiteProfiles | 403 | 437 | 35 | 6.654 | ||
| ProSiteProfiles | 438 | 472 | 35 | 7.87 | ||
| PANTHER | 439 | 746 | 308 | 0 | – | |
| PANTHER | 439 | 746 | 308 | 0 | – | |
| Pfam | 443 | 469 | 27 | 0.0067 | ||
| Pfam | 471 | 499 | 29 | 0.067 | ||
| Gene3D | 480 | 503 | 24 | 1.70E-05 | ||
| ProSiteProfiles | 503 | 537 | 35 | 6.347 | ||
| Pfam | 568 | 615 | 48 | 2.40E-09 | ||
| ProSiteProfiles | 568 | 602 | 35 | 11.772 | ||
| Gene3D | 571 | 604 | 34 | 1.70E-05 | ||
| TIGRFAM | 571 | 604 | 34 | 1.50E-06 | ||
| ProSiteProfiles | 603 | 633 | 31 | 7.552 | ||
| ProSiteProfiles | 639 | 669 | 31 | 7.136 | ||
| Gene3D | 640 | 724 | 85 | 1.70E-05 | ||
| ProSiteProfiles | 705 | 739 | 35 | 7.881 | ||
| Pfam | 712 | 737 | 26 | 0.33 | ||
| Pfam | 741 | 864 | 124 | 2.10E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v2236880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2236880.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.