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Lj3g3v2284470.1

Overview

Field Value
Gene ID Lj3g3v2284470
Transcript ID Lj3g3v2284470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31829:SF2
7 300 294 4.00E-192 –
PANTHER
PTHR31829
7 300 294 4.00E-192 –
PIRSF
PIRSF029271
13 299 287 1.50E-114
IPR001852
ProSiteProfiles
PS51129
27 279 253 87.241
IPR001852
Pfam
PF01680
27 225 199 6.70E-83
IPR033755
SUPERFAMILY
SSF51366
38 276 239 2.35E-48
IPR011060
Gene3D
G3DSA:3.20.20.70
42 172 131 6.60E-35
IPR013785
Gene3D
G3DSA:3.20.20.70
205 281 77 6.60E-35
IPR013785

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0042819
Biological process Vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Subterm of
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v2284470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2284470.1, powered by CORGI.

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