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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011060
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Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058939.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
2 domain predictions
1 GO term
Lj0g3v0058939.2
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
2 domain predictions
1 GO term
Lj0g3v0062759.1
n.a. PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1| chr0 21146844 21151064 -
2 domain predictions
1 GO term
Lj0g3v0127829.1
n.a. PREDICTED: n-(5'-phosphoribosyl)anthranilate isomerase-like [Glycine max] gi|356568244|ref|XP_003552323.1| chr0 57677302 57679923 +
2 domain predictions
1 GO term
Lj1g3v0969940.1
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|449533220|ref|XP_004173574.1| chr1 12291525 12292564 -
2 domain predictions
1 GO term
Lj1g3v0969950.1
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|502078164|ref|XP_004485858.1| chr1 12291701 12298439 -
2 domain predictions
1 GO term
Lj1g3v0969950.2
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|356548431|ref|XP_003542605.1| chr1 12291701 12308131 -
2 domain predictions
1 GO term
Lj1g3v3834260.1
n.a. PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Glycine max] gi|356571509|ref|XP_003553919.1| chr1 43658354 43663194 -
2 domain predictions
1 GO term
Lj1g3v4450430.1
n.a. PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Glycine max] gi|356572236|ref|XP_003554276.1| chr1 52175615 52179810 -
2 domain predictions
1 GO term
Lj2g3v2843800.1
n.a. Indole-3-glycerol phosphate synthase [Medicago truncatula] gi|357492951|ref|XP_003616764.1| chr2 37166701 37172754 -
2 domain predictions
1 GO term
Lj3g3v2284470.1
n.a. PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1| chr3 27952842 27954309 -
2 domain predictions
1 GO term
Lj3g3v2286550.1
n.a. PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1| chr3 27981062 27981970 -
2 domain predictions
1 GO term
Lj4g3v0014330.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr4 199819 204349 +
2 domain predictions
1 GO term
Lj4g3v1658720.1
n.a. PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like isoform X1 [Cicer arietinum] gi|502152018|ref|XP_004508723.1| chr4 24177020 24182224 +
2 domain predictions
1 GO term
Lj6g3v0508400.1
n.a. PREDICTED: n-(5'-phosphoribosyl)anthranilate isomerase-like [Glycine max] gi|356568244|ref|XP_003552323.1| chr6 4989101 4991698 -
2 domain predictions
1 GO term
Lj6g3v1967070.1
n.a. pyridoxine biosynthesis protein [Lotus japonicus] gi|72256517|gb|AAZ67141.1| chr6 22766875 22768353 -
2 domain predictions
1 GO term
LotjaGi1g1v0070800.1
n.a. Indole-3-glycerol phosphate synthase; TAIR: AT5G48220.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|P49572|TRPC_ARATH Indole-3-glycerol phosphate synthase, chloroplastic; TrEMBL-Plants: tr|G7KH34|G7KH34_MEDTR Indole-3-glycerol phosphate synthase; Found in the gene: LotjaGi1g1v0070800 LjG1.1_chr1 10064736 10071410 +
2 domain predictions
1 GO term
LotjaGi1g1v0070800.2
n.a. Indole-3-glycerol phosphate synthase; TAIR: AT5G48220.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|P49572|TRPC_ARATH Indole-3-glycerol phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A072UF41|A0A072UF41_MEDTR Indole-3-glycerol phosphate synthase; Found in the gene: LotjaGi1g1v0070800 LjG1.1_chr1 10065517 10070674 +
2 domain predictions
1 GO term
LotjaGi1g1v0283900.1
n.a. 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TAIR: AT2G36230.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O82782|HIS3_ARATH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic; TrEMBL-Plants: tr|K7LZZ8|K7LZZ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0283900 LjG1.1_chr1 69109279 69122830 -
2 domain predictions
1 GO term
LotjaGi1g1v0350000.1
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 81999031 82001882 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.2
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000326 82001656 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.3
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000436 82001656 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.4
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000455 82001656 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.5
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000455 82001879 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.6
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000760 82001656 +
2 domain predictions
1 GO term
LotjaGi1g1v0350000.7
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi1g1v0350000 LjG1.1_chr1 82000760 82001879 +
2 domain predictions
1 GO term
LotjaGi1g1v0622400.1
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT3G01850.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform; TrEMBL-Plants: tr|I3S751|I3S751_LOTJA Ribulose-phosphate 3-epimerase; Found in the gene: LotjaGi1g1v0622400 LjG1.1_chr1 116964870 116970539 -
2 domain predictions
1 GO term
LotjaGi1g1v0622400.2
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT3G01850.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform; TrEMBL-Plants: tr|I3S751|I3S751_LOTJA Ribulose-phosphate 3-epimerase; Found in the gene: LotjaGi1g1v0622400 LjG1.1_chr1 116965376 116970508 -
2 domain predictions
1 GO term
LotjaGi1g1v0714100.1
n.a. TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein; TAIR: AT4G02610.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain; TrEMBL-Plants: tr|I3S0A7|I3S0A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0714100 LjG1.1_chr1 128230882 128235558 +
2 domain predictions
1 GO term
LotjaGi1g1v0714100.2
n.a. TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein; TAIR: AT4G02610.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain; TrEMBL-Plants: tr|I3S0A7|I3S0A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0714100 LjG1.1_chr1 128231680 128234913 +
2 domain predictions
1 GO term
LotjaGi3g1v0111900.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13804766 13809702 +
2 domain predictions
1 GO term
LotjaGi3g1v0111900.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13806182 13808728 +
2 domain predictions
1 GO term
LotjaGi3g1v0111900.3
n.a. Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13806878 13807622 +
2 domain predictions
1 GO term
LotjaGi3g1v0111900.4
n.a. Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13806878 13807658 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969747 67988419 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969782 67988419 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.3
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67983670 67988064 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.5
n.a. Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|K7M0S3|K7M0S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67984360 67985198 +
2 domain predictions
1 GO term
LotjaGi3g1v0364100.1
n.a. Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT3G16050.1 pyridoxine biosynthesis 1.2; Swiss-Prot: sp|Q9ZNR6|PDX12_ARATH Pyridoxal 5'-phosphate synthase-like subunit PDX1.2; TrEMBL-Plants: tr|V4SSW9|V4SSW9_9ROSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0364100 LjG1.1_chr3 74981976 74984607 -
2 domain predictions
1 GO term
LotjaGi4g1v0002000.1
n.a. Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT4G26900.1 HIS HF; Swiss-Prot: sp|Q9SZ30|HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic; TrEMBL-Plants: tr|I1N0Y1|I1N0Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002000 LjG1.1_chr4 378079 395782 +
2 domain predictions
1 GO term
LotjaGi4g1v0250500.1
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT5G61410.1 D-ribulose-5-phosphate-3-epimerase; Swiss-Prot: sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic; TrEMBL-Plants: tr|I3S6Q9|I3S6Q9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0250500 LjG1.1_chr4 60398310 60404150 +
2 domain predictions
1 GO term
LotjaGi4g1v0250500.2
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT5G61410.1 D-ribulose-5-phosphate-3-epimerase; Swiss-Prot: sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic; TrEMBL-Plants: tr|I3S6Q9|I3S6Q9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0250500 LjG1.1_chr4 60398822 60402900 +
2 domain predictions
1 GO term
LotjaGi4g1v0250500.3
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT5G61410.1 D-ribulose-5-phosphate-3-epimerase; Swiss-Prot: sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic; TrEMBL-Plants: tr|I3S6Q9|I3S6Q9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0250500 LjG1.1_chr4 60398895 60402900 +
2 domain predictions
1 GO term
LotjaGi4g1v0250500.4
n.a. Ribulose-phosphate 3-epimerase; TAIR: AT5G61410.1 D-ribulose-5-phosphate-3-epimerase; Swiss-Prot: sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic; TrEMBL-Plants: tr|I3S6Q9|I3S6Q9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0250500 LjG1.1_chr4 60398937 60402900 +
2 domain predictions
1 GO term
LotjaGi6g1v0076200.1
n.a. N-(5-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|I1MZ16|I1MZ16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0076200 LjG1.1_chr6 14495945 14498608 +
2 domain predictions
1 GO term
LotjaGi6g1v0076200.2
n.a. N-(5'-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi6g1v0076200 LjG1.1_chr6 14497411 14498298 +
2 domain predictions
1 GO term
LotjaGi6g1v0076200.3
n.a. N-(5'-phosphoribosyl)anthranilate isomerase; TAIR: AT1G07780.1 phosphoribosylanthranilate isomerase 1; Swiss-Prot: sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic; TrEMBL-Plants: tr|G7JBT1|G7JBT1_MEDTR N-(5-phosphoribosyl)anthranilate isomerase; Found in the gene: LotjaGi6g1v0076200 LjG1.1_chr6 14497411 14498483 +
2 domain predictions
1 GO term
LotjaGi6g1v0317700.1
n.a. Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q39963|PDX1_HEVBR Probable pyridoxal 5'-phosphate synthase subunit PDX1; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700 LjG1.1_chr6 63514239 63515354 -
2 domain predictions
1 GO term
LotjaGi6g1v0317700.2
n.a. Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700 LjG1.1_chr6 63514335 63515354 -
2 domain predictions
1 GO term
LotjaGi6g1v0317700.3
n.a. Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700 LjG1.1_chr6 63514422 63515360 -
2 domain predictions
1 GO term