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Lj3g3v2310050.1

Overview

Field	Value
Gene ID	Lj3g3v2310050
Transcript ID	Lj3g3v2310050.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max] gi\|356542565\|ref\|XP_003539737.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	40	40	–	–
PANTHER	PTHR31992:SF8 View details on PTHR31992:SF8 Search for proteins/transripts with this domain View external data on PTHR31992:SF8	1	291	291	2.80E-74	–
PANTHER	PTHR31992 View details on PTHR31992 Search for proteins/transripts with this domain View external data on PTHR31992	1	291	291	2.80E-74	–
ProDom	PD007478 View details on PD007478 Search for proteins/transripts with this domain View external data on PD007478	27	89	63	4.00E-29	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02701 View details on PF02701 Search for proteins/transripts with this domain View external data on PF02701	39	94	56	4.60E-34	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50884 View details on PS50884 Search for proteins/transripts with this domain View external data on PS50884	40	94	55	29.609	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS01361 View details on PS01361 Search for proteins/transripts with this domain View external data on PS01361	42	78	37	–	IPR003851 Show description in modal box View details on IPR003851 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	85	116	32	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2310050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2310050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.