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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2317920 |
| Transcript ID | Lj3g3v2317920.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ribose-phosphate pyrophosphokinase 5, chloroplastic-like [Glycine max] gi|356504490|ref|XP_003521029.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 12 | 9 | – | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 404 | 384 | – | – | |
| PANTHER | 77 | 392 | 316 | 1.10E-279 | – | |
| PANTHER | 77 | 392 | 316 | 1.10E-279 | – | |
| Gene3D | 86 | 243 | 158 | 8.50E-73 | ||
| Hamap | 88 | 398 | 311 | 47.12 | ||
| Pfam | 88 | 204 | 117 | 3.10E-50 | ||
| SMART | 88 | 204 | 117 | 2.80E-81 | – | |
| TIGRFAM | 89 | 391 | 303 | 1.10E-119 | ||
| SUPERFAMILY | 153 | 389 | 237 | 2.38E-61 | ||
| ProSitePatterns | 212 | 227 | 16 | – | ||
| Gene3D | 244 | 366 | 123 | 6.80E-48 | ||
| CDD | 247 | 359 | 113 | 1.47E-23 | ||
| Pfam | 290 | 392 | 103 | 2.00E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of Lj3g3v2317920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2317920.1, powered by CORGI.
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