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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2437590 |
| Transcript ID | Lj3g3v2437590.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Glycine max] gi|356522522|ref|XP_003529895.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 125 | 160 | 36 | 7.794 | ||
| ProSiteProfiles | 161 | 195 | 35 | 5.283 | ||
| PANTHER | 188 | 358 | 171 | 0 | – | |
| PANTHER | 188 | 358 | 171 | 0 | – | |
| ProSiteProfiles | 227 | 261 | 35 | 7.881 | ||
| Pfam | 230 | 256 | 27 | 0.0071 | ||
| Gene3D | 235 | 276 | 42 | 4.90E-06 | ||
| ProSiteProfiles | 262 | 296 | 35 | 5.974 | ||
| ProSiteProfiles | 297 | 327 | 31 | 8.396 | ||
| TIGRFAM | 300 | 325 | 26 | 2.70E-04 | ||
| Pfam | 300 | 325 | 26 | 0.0026 | ||
| Pfam | 327 | 371 | 45 | 8.60E-08 | ||
| ProSiteProfiles | 328 | 362 | 35 | 10.841 | ||
| TIGRFAM | 331 | 364 | 34 | 1.30E-06 | ||
| ProSiteProfiles | 363 | 397 | 35 | 9.898 | ||
| Gene3D | 366 | 390 | 25 | 4.90E-06 | ||
| PANTHER | 394 | 813 | 420 | 0 | – | |
| PANTHER | 394 | 813 | 420 | 0 | – | |
| ProSiteProfiles | 433 | 463 | 31 | 5.886 | ||
| Gene3D | 458 | 632 | 175 | 4.90E-06 | ||
| Pfam | 463 | 510 | 48 | 1.70E-11 | ||
| ProSiteProfiles | 464 | 498 | 35 | 12.902 | ||
| TIGRFAM | 467 | 499 | 33 | 4.70E-08 | ||
| ProSiteProfiles | 499 | 533 | 35 | 10.643 | ||
| TIGRFAM | 501 | 535 | 35 | 1.60E-04 | ||
| Pfam | 533 | 581 | 49 | 2.50E-14 | ||
| ProSiteProfiles | 534 | 568 | 35 | 12.068 | ||
| TIGRFAM | 536 | 569 | 34 | 6.10E-08 | ||
| ProSiteProfiles | 569 | 603 | 35 | 5.7 | ||
| ProSiteProfiles | 604 | 634 | 31 | 8.594 | ||
| Pfam | 609 | 634 | 26 | 0.004 | ||
| ProSiteProfiles | 635 | 669 | 35 | 9.723 | ||
| TIGRFAM | 638 | 671 | 34 | 5.10E-06 | ||
| Pfam | 638 | 681 | 44 | 1.10E-09 | ||
| ProSiteProfiles | 670 | 700 | 31 | 8.024 | ||
| TIGRFAM | 672 | 705 | 34 | 5.30E-04 | ||
| ProSiteProfiles | 706 | 736 | 31 | 7.125 | ||
| Pfam | 709 | 733 | 25 | 0.0083 | ||
| ProSiteProfiles | 772 | 806 | 35 | 7.344 | ||
| Pfam | 811 | 932 | 122 | 1.50E-33 | ||
| ProSiteProfiles | 818 | 853 | 36 | 5.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v2437590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2437590.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.