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Lj3g3v2477670.1

Overview

Field Value
Gene ID Lj3g3v2477670
Transcript ID Lj3g3v2477670.1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB92 [Glycine max] gi|351722536|ref|NP_001238271.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 141 141 6.00E-97 –
PANTHER
PTHR10641:SF613
1 141 141 6.00E-97 –
ProSiteProfiles
PS51294
9 61 53 15.671
IPR017930
SUPERFAMILY
SSF46689
11 108 98 1.24E-30
IPR009057
SMART
SM00717
13 63 51 3.70E-13
IPR001005
Pfam
PF00249
14 61 48 8.20E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
15 68 54 5.20E-25
IPR009057
CDD
cd00167
16 61 46 3.02E-10 –
ProSiteProfiles
PS51294
62 116 55 24.807
IPR017930
SMART
SM00717
66 114 49 7.10E-15
IPR001005
Pfam
PF00249
67 112 46 4.20E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
69 115 47 3.40E-27
IPR009057
CDD
cd00167
71 112 42 4.06E-12 –
MobiDBLite
mobidb-lite
128 156 29 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v2477670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2477670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.