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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2478790 |
| Transcript ID | Lj3g3v2478790.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | type IIA calcium ATPase [Medicago truncatula] gi|17342714|gb|AAL35972.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 126 | 126 | 0 | – | |
| Phobius | 1 | 457 | 457 | – | – | |
| PANTHER | 1 | 126 | 126 | 0 | – | |
| Gene3D | 14 | 285 | 272 | 4.80E-65 | ||
| Pfam | 21 | 400 | 380 | 5.70E-19 | – | |
| SUPERFAMILY | 22 | 42 | 21 | 2.47E-54 | ||
| PRINTS | 24 | 38 | 15 | 2.80E-36 | – | |
| ProSitePatterns | 26 | 32 | 7 | – | ||
| SUPERFAMILY | 31 | 282 | 252 | 2.40E-52 | ||
| PANTHER | 147 | 543 | 397 | 0 | – | |
| PANTHER | 147 | 543 | 397 | 0 | – | |
| SUPERFAMILY | 218 | 490 | 273 | 2.47E-54 | ||
| PRINTS | 278 | 289 | 12 | 2.80E-36 | – | |
| CDD | 286 | 405 | 120 | 5.35E-07 | – | |
| PRINTS | 300 | 310 | 11 | 2.80E-36 | – | |
| TIGRFAM | 359 | 471 | 113 | 6.50E-36 | ||
| Gene3D | 359 | 545 | 187 | 1.90E-87 | ||
| PRINTS | 386 | 405 | 20 | 2.80E-36 | – | |
| PRINTS | 410 | 422 | 13 | 2.80E-36 | – | |
| TMHMM | 458 | 480 | 23 | – | – | |
| Phobius | 458 | 480 | 23 | – | – | |
| Pfam | 471 | 543 | 73 | 1.10E-20 | ||
| Phobius | 481 | 514 | 34 | – | – | |
| Phobius | 515 | 542 | 28 | – | – | |
| TMHMM | 520 | 542 | 23 | – | – | |
| Phobius | 543 | 549 | 7 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v2478790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2478790.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.