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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2478800 |
| Transcript ID | Lj3g3v2478800.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g08510-like [Glycine max] gi|356559933|ref|XP_003548250.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 483 | 439 | 3.10E-270 | – | |
| ProSiteProfiles | 69 | 104 | 36 | 8.769 | ||
| Pfam | 70 | 116 | 47 | 3.60E-07 | ||
| ProSiteProfiles | 105 | 139 | 35 | 7.059 | ||
| ProSiteProfiles | 140 | 170 | 31 | 8.506 | ||
| Pfam | 145 | 169 | 25 | 0.012 | ||
| Gene3D | 171 | 256 | 86 | 1.20E-04 | ||
| ProSiteProfiles | 171 | 205 | 35 | 10.786 | ||
| TIGRFAM | 174 | 204 | 31 | 1.10E-06 | ||
| Pfam | 202 | 250 | 49 | 4.00E-10 | ||
| TIGRFAM | 204 | 238 | 35 | 3.50E-08 | ||
| ProSiteProfiles | 206 | 237 | 32 | 6.719 | ||
| ProSiteProfiles | 238 | 272 | 35 | 5.908 | ||
| ProSiteProfiles | 273 | 303 | 31 | 7.728 | ||
| Pfam | 278 | 300 | 23 | 0.28 | ||
| ProSiteProfiles | 305 | 339 | 35 | 11.016 | ||
| Pfam | 305 | 351 | 47 | 2.00E-08 | ||
| Gene3D | 308 | 341 | 34 | 1.20E-04 | ||
| TIGRFAM | 308 | 340 | 33 | 2.00E-06 | ||
| ProSiteProfiles | 340 | 370 | 31 | 7.322 | ||
| ProSiteProfiles | 376 | 406 | 31 | 7.432 | ||
| Gene3D | 377 | 461 | 85 | 1.20E-04 | ||
| Pfam | 379 | 404 | 26 | 0.017 | ||
| ProSiteProfiles | 408 | 438 | 31 | 5.13 | ||
| ProSiteProfiles | 442 | 476 | 35 | 5.974 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v2478800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2478800.1, powered by CORGI.
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